Showing : Combat SVA • reset
0
votes
1
reply
3.4k
views
SVA behaving weirdly, system is computationally singular , problem with method leek only
SVA combat sva leek
updated 3.0 years ago by • 0 • written 7.0 years ago by ▴ 10
0
votes
0
replies
935
views
ComBat covariate bias when building centroid based predictors
combat combat sva pamr limma design matrix sva
5.7 years ago jmsendoya • 0
0
votes
0
replies
823
views
Help with multiple batch effects
combat sva batch effect
5.9 years ago Fp • 0
0
votes
0
replies
631
views
Number of SVA increased after ComBat
combat sva
6.1 years ago jonellevillar • 0
0
votes
1
reply
1.2k
views
Combat prior plots good enough?
combat combat sva
6.6 years ago Miss Agnieszka Aleksandra Golicz ▴ 40
0
votes
0
replies
1.2k
views
removing batch effects using sva combat and linear regression
combat sva microarry Jeff leek
6.8 years ago DataFanatic ▴ 10
0
votes
0
replies
889
views
SVA: Reference manual improvment
combat sva sva
7.0 years ago alice.anlind • 0
0
votes
0
replies
1.2k
views
What is the input for Combat in R?
combat sva input files
7.2 years ago arisarkar88 ▴ 40
0
votes
0
replies
1.2k
views
RPKM counts with SVA package & Combat with SVA?
batch effect combat sva sva
7.2 years ago Ahdee ▴ 50
0
votes
2
replies
954
views
Problem with Combat batch adjustment
combat sva
7.4 years ago vinnu260 ▴ 10
1
vote
2
replies
1.5k
views
is it possible to before and after batch effect removal from the data and see that batch effect removal actually worked
combat sva batch effect comba
updated 7.5 years ago by ▴ 110 • written 7.5 years ago by ▴ 10
3
votes
6
replies
2.3k
views
is it necessary to check batch effect in this case? and how to?
svaseq combat sva RANseq batcheffect removebatcheffect
updated 7.6 years ago by ▴ 50 • written 7.6 years ago by ▴ 10
0
votes
0
replies
931
views
SVA) Error while using 'sva' package - combat
combat sva
7.7 years ago kkwon • 0
1
vote
1
reply
1.6k
views
Inspection of batch effect correction success with ComBat in R, regarding a merged dataset comprised of 4 different batches
affymetrix microarrays sva combat sva batch effect plotMDS
updated 7.7 years ago by ▴ 650 • written 7.7 years ago by ▴ 830
1
vote
2
replies
1.3k
views
Batch effect problem using SVA showing problems
SVA combat sva batch effect
updated 7.7 years ago by ▴ 650 • written 7.7 years ago by ▴ 10
0
votes
4
replies
1.9k
views
ComBat: Adjustment for 3experimental variables
ENmix combat.mc illumina450k combat sva
7.9 years ago DSP • 0
0
votes
0
replies
1.1k
views
SVA: Using ComBat for synthetic genetic array data
combat sva sga combat batch effect
8.0 years ago John Townsend ▴ 20
7
votes
3
replies
3.1k
views
SVA: Including variable of interest in ComBat model matrix
combat sva SVA sva ComBat batch effect
updated 8.1 years ago by ▴ 850 • written 8.1 years ago by ▴ 20
1
vote
2
replies
2.5k
views
cross platform normalization in R
R Combat SVA
updated 8.3 years ago by ★ 13k • written 8.3 years ago by • 0
19 results • Page 1 of 1
Recent ...
Replies
Comment: deseq2 results by swbarnes2 ★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code? by NATASHA • 0
did you find a solution? I´m having the same problem
Comment: error by NATASHA • 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
Awards • All
Popular Question to maria.soler • 0
Popular Question to Pietro ▴ 40
Popular Question to neilzhao ▴ 30
Popular Question to ATpoint ★ 4.1k
Teacher to Michael Love 42k
Locations • All
Pakistan, 4 minutes ago
France, 10 minutes ago
the United States, 22 minutes ago
WEHI, Melbourne, Australia, 25 minutes ago
United Kingdom, 1 hour ago
Traffic: 424 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6